Yutaro Kumagai: search on Z-Library

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1

Intracellular protein-labeling probes for multicolor single-molecule imaging of immune receptor-adaptor molecular dynamics

Sato, Ryota, Kozuka, Jun, Ueda, Masahiro, Mishima, Reiko, Kumagai, Yutaro, Yoshimura, Akimasa, Minoshima, Masafumi, Mizukami, Shin, Kikuchi, Kazuya

Journal:

Journal of the American Chemical Society

Year:

2017

Language:

english

File:

PDF, 1.62 MB

english, 2017

2

Identification and functions of pattern-recognition receptors

Kumagai, Yutaro, Akira, Shizuo

Journal:

Journal of Allergy and Clinical Immunology

Year:

2010

Language:

english

File:

PDF, 705 KB

english, 2010

3

The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection

Satoh, Takashi, Takeuchi, Osamu, Vandenbon, Alexis, Yasuda, Koubun, Tanaka, Yoshiaki, Kumagai, Yutaro, Miyake, Tohru, Matsushita, Kazufumi, Okazaki, Toshihiko, Saitoh, Tatsuya

Journal:

Nature Immunology

Year:

2010

Language:

english

File:

PDF, 1.85 MB

english, 2010

4

TLR9 as a key receptor for the recognition of DNA

Yutaro Kumagai, Osamu Takeuchi, Shizuo Akira

Journal:

Advanced Drug Delivery Reviews

Year:

2008

Language:

english

File:

PDF, 959 KB

english, 2008

5

Fluorescent Phospholipid Analogs as Microscopic Probes for Detection of the Mycolic Acid-Containing Layer in Corynebacterium glutamicum : Detecting Alterations in the Mycolic Acid-Containing Layer Following Ethambutol Treatment

KUMAGAI, Yutaro, HIRASAWA, Takashi, HAYAKAWA, Kenshi, NAGAI, Kazuo, WACHI, Masaaki

Journal:

Bioscience Biotechnology and Biochemistry

Year:

2005

Language:

english

File:

PDF, 247 KB

english, 2005

6

Raman spectroscopy as a tool for label-free lymphocyte cell line discrimination

Hobro, Alison Jane, Kumagai, Yutaro, Akira, Shizuo, Smiith, Nicholas I

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2016

Language:

english

File:

PDF, 2.39 MB

english, 2016

7

Mind Bomb Proteins in the Antiviral Arsenal

Yutaro Kumagai, Shizuo Akira

Journal:

Year:

2011

Language:

english

File:

PDF, 215 KB

english, 2011

8

[IEEE 2011 International Quantum Electronics Conference (IQEC) and Conference on Lasers and Electro-Optics (CLEO) Pacific Rim - Sydney, Australia (2011.08.28-2011.09.1)] 2011 International Quantum Electronics Conference (IQEC) and Conference on Lasers and Electro-Optics (CLEO) Pacific Rim incorporating the Australasian Conference on Optics, Lasers and Spectroscopy and the Australian Conference on Optical Fibre Technology - Optical control of cell functions: Using laser light to remote control signalling, contraction and action potentials in living cells

Smith, Nicholas I., Fujita, Katsumasa, Kawata, Satoshi, Kumagai, Yutaro

Year:

2011

Language:

english

File:

PDF, 116 KB

english, 2011

9

Impact in stability during sequential CDR grafting to construct camelid VHH antibodies against zinc oxide and gold

Saito, Ryota, Saito, Yutaro, Nakazawa, Hikaru, Hattori, Takamitsu, Kumagai, Izumi, Umetsu, Mitsuo, Makabe, Koki

Journal:

Journal of Biochemistry

Year:

2018

Language:

english

File:

PDF, 354 KB

english, 2018

10

A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira, Daron M Standley

Journal:

Year:

2012

Language:

english

File:

PDF, 993 KB

english, 2012

11

LGP2 Is a Positive Regulator of RIG-I- and MDA5-Mediated Antiviral Responses

Takashi Satoh, Hiroki Kato, Yutaro Kumagai, Mitsutoshi Yoneyama, Shintaro Sato, Kazufumi Matsushita, Tohru Tsujimura, Takashi Fujita, Shizuo Akira and Osamu Takeuchi

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.37 MB

english, 2010

12

Microarray analysis of macrophage response to infection with Streptococcus oralis reveals the immunosuppressive effect of hydrogen peroxide

Matsushima, Hitomi, Kumagai, Yutaro, Vandenbon, Alexis, Kataoka, Hideo, Kadena, Miki, Fukamachi, Haruka, Arimoto, Takafumi, Morisaki, Hirobumi, Fujiwara, Nagatoshi, Okahashi, Nobuo, Kuwata, Hirotaka

Journal:

Biochemical and Biophysical Research Communications

Year:

2017

Language:

english

File:

PDF, 851 KB

english, 2017

13

Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation

Vandenbon, Alexis, Kumagai, Yutaro, Lin, Mengjie, Suzuki, Yutaka, Nakai, Kenta

Journal:

Year:

2018

Language:

english

File:

PDF, 1.90 MB

english, 2018

14

Automated processing of label-free Raman microscope images of macrophage cells with standardized regression for high-throughput analysis

Robert J Milewski, Yutaro Kumagai, Katsumasa Fujita, Daron M Standley, Nicholas I Smith

Journal:

Immunome Research

Year:

2010

Language:

english

File:

PDF, 1.50 MB

english, 2010

15

Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay

Matsushita, Kazufumi, Takeuchi, Osamu, Standley, Daron M., Kumagai, Yutaro, Kawagoe, Tatsukata, Miyake, Tohru, Satoh, Takashi, Kato, Hiroki, Tsujimura, Tohru, Nakamura, Haruki

Journal:

Year:

2009

Language:

english

File:

PDF, 910 KB

english, 2009

16

RNA Sensing by Gut Piezo1 Is Essential for Systemic Serotonin Synthesis

Sugisawa, Erika, Takayama, Yasunori, Takemura, Naoki, Kondo, Takeshi, Hatakeyama, Shigetsugu, Kumagai, Yutaro, Sunagawa, Masataka, Tominaga, Makoto, Maruyama, Kenta

Journal:

Year:

2020

File:

PDF, 8.35 MB

2020

17

Sequential control of Toll-like receptor–dependent responses by IRAK1 and IRAK2

Kawagoe, Tatsukata, Sato, Shintaro, Matsushita, Kazufumi, Kato, Hiroki, Matsui, Kosuke, Kumagai, Yutaro, Saitoh, Tatsuya, Kawai, Taro, Takeuchi, Osamu, Akira, Shizuo

Journal:

Nature Immunology

Year:

2008

Language:

english

File:

PDF, 527 KB

english, 2008

18

Intracellular cholesterol level regulates sensitivity of glioblastoma cells against temozolomide-induced cell death by modulation of caspase-8 activation via death receptor 5-accumulation and activation in the plasma membrane lipid raft

Yamamoto, Yutaro, Tomiyama, Arata, Sasaki, Nobuyoshi, Yamaguchi, Hideki, Shirakihara, Takuya, Nakashima, Katsuhiko, Kumagai, Kosuke, Takeuchi, Satoru, Toyooka, Terushige, Otani, Naoki, Wada, Kojiro, N

Journal:

Biochemical and Biophysical Research Communications

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

19

Detection of pathogenic intestinal bacteria by Toll-like receptor 5 on intestinal CD11c+ lamina propria cells

Uematsu, Satoshi, Jang, Myoung Ho, Chevrier, Nicolas, Guo, Zijin, Kumagai, Yutaro, Yamamoto, Masahiro, Kato, Hiroki, Sougawa, Nagako, Matsui, Hidenori, Kuwata, Hirotaka

Journal:

Nature Immunology

Year:

2006

Language:

english

File:

PDF, 426 KB

english, 2006

20

Microarray analysis identifies apoptosis regulatory gene expression in HCT116 cells infected with thermostable direct hemolysin-deletion mutant of Vibrio parahaemolyticus

Rabindra N. Bhattacharjee, Kwon-Sam Park, Kazuhisa Okada, Yutaro Kumagai, Satoshi Uematsu, Osamu Takeuchi, Shizuo Akira, Tetsuya Iida, Takeshi Honda

Journal:

Biochemical and Biophysical Research Communications

Year:

2005

Language:

english

File:

PDF, 1.01 MB

english, 2005

21

Double-Stranded RNA of Intestinal Commensal but Not Pathogenic Bacteria Triggers Production of Protective Interferon-β

Kawashima, Tadaomi, Kosaka, Akemi, Yan, Huimin, Guo, Zijin, Uchiyama, Ryosuke, Fukui, Ryutaro, Kaneko, Daisuke, Kumagai, Yutaro, You, Dong-Ju, Carreras, Joaquim, Uematsu, Satoshi, Jang, Myoung Ho, Tak

Journal:

Year:

2013

Language:

english

File:

PDF, 876 KB

english, 2013

22

Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs

Kumagai, Yutaro, Vandenbon, Alexis, Teraguchi, Shunsuke, Akira, Shizuo, Suzuki, Yutaka

Journal:

Year:

2016

Language:

english

File:

PDF, 5.79 MB

english, 2016

23

Smallest optical gap for quasi-one-dimensional iodo-bridged platinum compounds

Shin, Minseob, Takaishi, Shinya, Kumagai, Shohei, Ueda, Yutaro, Breedlove, Brian K., Matsuzaki, Hiroyuki, Okamoto, Hiroshi, Wakabayashi, Yusuke, Yamashita, Masahiro

Journal:

Dalton Transactions

Year:

2013

Language:

english

File:

PDF, 747 KB

english, 2013

24

Alveolar Macrophages Are the Primary Interferon-α Producer in Pulmonary Infection with RNA Viruses

Yutaro Kumagai, Osamu Takeuchi, Hiroki Kato, Himanshu Kumar, Kosuke Matsui, Eiichi Morii, Katsuyuki Aozasa, Taro Kawai, Shizuo Akira

Journal:

Year:

2007

Language:

english

File:

PDF, 2.26 MB

english, 2007

25

Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations

Teraguchi, Shunsuke, Kumagai, Yutaro, Vandenbon, Alexis, Akira, Shizuo, Standley, Daron M

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 318 KB

english, 2011

26

Functional characterization of protein domains common to animal viruses and mouse

Akira R Kinjo, Yutaro Kumagai, Huy Dinh, Osamu Takeuchi, Daron M Standley

Journal:

Year:

2011

Language:

english

File:

PDF, 778 KB

english, 2011

27

Involvement of Intracellular Cholesterol in Temozolomide-Induced Glioblastoma Cell Death

YAMAMOTO, Yutaro, SASAKI, Nobuyoshi, KUMAGAI, Kosuke, TAKEUCHI, Satoru, TOYOOKA, Terushige, OTANI, Naoki, WADA, Kojiro, NARITA, Yoshitaka, ICHIMURA, Koichi, NAMBA, Hiroki, MORI, Kentaro, TOMIYAMA, Ara

Journal:

Neurologia medico-chirurgica

Year:

2018

Language:

english

File:

PDF, 908 KB

english, 2018

28

Microarray and gene co-expression analysis reveals that melatonin attenuates immune responses and modulates actin rearrangement in macrophages

Kadena, Miki, Kumagai, Yutaro, Vandenbon, Alexis, Matsushima, Hitomi, Fukamachi, Haruka, Maruta, Noboru, Kataoka, Hideo, Arimoto, Takafumi, Morisaki, Hirobumi, Funatsu, Takahiro, Kuwata, Hirotaka

Journal:

Biochemical and Biophysical Research Communications

Year:

2017

Language:

english

File:

PDF, 1004 KB

english, 2017

29

Facile synthesis and fundamental properties of an N -methylguanidine-bridged nucleic acid (GuNA[NMe])

Horie, Naohiro, Kumagai, Shinji, Kotobuki, Yutaro, Yamaguchi, Takao, Obika, Satoshi

Journal:

Organic & Biomolecular Chemistry

Year:

2018

Language:

english

File:

PDF, 472 KB

english, 2018

30

Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating

Takayama, Yuzo, Kushige, Hiroko, Akagi, Yuka, Suzuki, Yutaka, Kumagai, Yutaro, Kida, Yasuyuki S.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.23 MB

2020

31

Prediction of dinucleotide-specific RNA-binding sites in proteins

Michael Fernandez, Yutaro Kumagai, Daron M Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 836 KB

english, 2011

32

A Corynebacterium glutamicum rnhA recG Double Mutant Showing Lysozyme- sensitivity, Temperature-sensitive Growth, and UV-Sensitivity

HIRASAWA, Takashi, KUMAGAI, Yutaro, NAGAI, Kazuo, WACHI, Masaaki

Journal:

Bioscience Biotechnology and Biochemistry

Year:

2003

Language:

english

File:

PDF, 1.29 MB

english, 2003

33

Pathogen recognition by innate receptors

Yutaro Kumagai, Osamu Takeuchi, Shizuo Akira

Journal:

Journal of Infection and Chemotherapy

Year:

2008

Language:

english

File:

PDF, 307 KB

english, 2008

34

Regulation of lipopolysaccharide-inducible genes by MyD88 and Toll/IL-1 domain containing adaptor inducing IFN-β

Tomonori Hirotani, Masahiro Yamamoto, Yutaro Kumagai, Satoshi Uematsu, Ichiro Kawase, Osamu Takeuchi, Shizuo Akira

Journal:

Biochemical and Biophysical Research Communications

Year:

2005

Language:

english

File:

PDF, 1.13 MB

english, 2005

35

Linking Transcriptional Changes over Time in Stimulated Dendritic Cells to Identify Gene Networks Activated during the Innate Immune Response

Patil, Ashwini, Kumagai, Yutaro, Liang, Kuo-ching, Suzuki, Yutaka, Nakai, Kenta, Saucerman, Jeffrey J.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.11 MB

english, 2013

36

Pathogenic role of B cells in the development of diffuse alveolar hemorrhage induced by pristane

Barker, Tolga T, Lee, Pui Y, Kelly-Scumpia, Kindra M, Weinstein, Jason S, Nacionales, Dina C, Kumagai, Yutaro, Akira, Shizuo, Croker, Byron P, Sobel, Eric S, Reeves, Westley H, Satoh, Minoru

Journal:

Laboratory Investigation

Year:

2011

Language:

english

File:

PDF, 700 KB

english, 2011

37

Nociceptors Boost the Resolution of Fungal Osteoinflammation via the TRP Channel-CGRP-Jdp2 Axis

Maruyama, Kenta, Takayama, Yasunori, Kondo, Takeshi, Ishibashi, Ken-ichi, Sahoo, Bikash Ranjan, Kanemaru, Hisashi, Kumagai, Yutaro, Martino, Mikaël M., Tanaka, Hiroki, Ohno, Naohito, Iwakura, Yoichiro

Journal:

Year:

2017

Language:

english

File:

PDF, 5.69 MB

english, 2017

38

Analysis of changes in transcription start site distribution by a classification approach

Liang, Kuo-ching, Suzuki, Yutaka, Kumagai, Yutaro, Nakai, Kenta

Journal:

Year:

2014

Language:

english

File:

PDF, 800 KB

english, 2014

39

Effect of Surface-Modified Gold Nanorods on the Inflammatory Cytokine Response in Macrophage Cells

Pissuwan, Dakrong, Kumagai, Yutaro, Smith, Nicholas I.

Journal:

Particle & Particle Systems Characterization

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

40

Laser-targeted photofabrication of gold nanoparticles inside cells

Smith, Nicholas I., Mochizuki, Kentaro, Niioka, Hirohiko, Ichikawa, Satoshi, Pavillon, Nicolas, Hobro, Alison J., Ando, Jun, Fujita, Katsumasa, Kumagai, Yutaro

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.54 MB

english, 2014

41

IκBξ is essential for natural killer cell activation in response to IL-12 and IL-18

Tohru Miyake, Takashi Satoh, Hiroki Kato, Kazufumi Matsushita, Yutaro Kumagai, Alexis Vandenbon, Tohru Tani, Tatsushi Muta, Shizuo Akira and Osamu Takeuchi

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.40 MB

english, 2010

42

Innate Immunity Interactome Dynamics

Elzawahry,, Nakai, Kenta, Patil, Ashwini, Kumagai, Yutaro, Suzuki, Yutaka

Journal:

Gene Regulation and Systems Biology

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

43

Type I Interferon Modulates Monocyte Recruitment and Maturation in Chronic Inflammation

Pui Y. Lee, Yi Li, Yutaro Kumagai, Yuan Xu, Jason S. Weinstein, Erinn S. Kellner, Dina C. Nacionales, Edward J. Butfiloski, Nico van Rooijen, Shizuo Akira, Eric S. Sobel, Minoru Satoh, Westley H. Reev

Journal:

The American Journal of Pathology

Year:

2009

Language:

english

File:

PDF, 1012 KB

english, 2009

44

Performance and Uniformity of Mass-Produced SIS Mixers for ALMA Band 8 Receiver Cartridges

Tamura, Tomonori, Noguchi, Takashi, Sekimoto, Yutaro, Shan, Wenlei, Sato, Naohisa, Iizuka, Yoshizo, Kumagai, Kazuyoshi, Niizeki, Yasuaki, Iwakuni, Mikio, Ito, Tetsuya

Journal:

IEEE Transactions on Appiled Superconductivity

Year:

2015

Language:

english

File:

PDF, 1001 KB

english, 2015

45

Estimation of diffusion constants from single molecular measurement without explicit tracking

Teraguchi, Shunsuke, Kumagai, Yutaro

Journal:

BMC Systems Biology

Year:

2018

Language:

english

File:

PDF, 1.85 MB

english, 2018

46

A Parzen window-based approach for the detection of locally enriched transcription factor binding sites

Alexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 472 KB

english, 2013

47

3P-271 Synthesis of size-controlled fluorescent nanoparticles to improve cellular uptake(Miscellaneous topics,The 47th Annual Meeting of the Biophysical Society of Japan)

Fujii, Fumihiko, Furusho, Hirotoshi, Kumagai, Yutaro, Jin, Takashi

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 237 KB

english, 2009

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